rnaglib.utils.download_graphs

rnaglib.utils.download_graphs(redundancy='nr', version='1.0.0', annotated=False, chop=False, overwrite=False, data_root=None, verbose=False, get_pdbs=False, debug=False)[source]

Based on the options, get the right data from the latest release and put it in download_dir.

Parameters:
  • redundancy – Whether to include all RNAs or just a non-redundant set as defined by BGSU

  • annotated – Whether to include graphlet annotations in the graphs. This will also create a hashing directory and table

  • overwrite – To overwrite existing data

  • download_dir – Where to save this data. Defaults to ~/.rnaglib/

  • store_pdbs – Whether to store assocaited PDBs in ~/.rnaglib/structures

Returns:

the path of the data along with its hashing.