rnaglib.tasks
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Task objects hold everything you need to feed a prediction model and evaluate its performance on a variety of tasks, as well as to easily implement your own tasks.
Abstract classes¶
Subclass these to create your own tasks.
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Abstract class for a benchmarking task using the rnaglib datasets. |
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RNA-level Classification¶
These tasks take as input an RNA and predict a property of the whole molecule.
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Predict the Rfam family of a given RNA chain. |
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Residue-level Classification¶
These tasks take as input an RNA and predict a property of each residue of the molecule.
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Residue-level binary classification task to predict whether or not a given residue is chemically modified. |
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Substructure-level Classification¶
Predict properties of substructures of a whole molecule (e.g. binding sites)
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