rnaglib.transforms.ResidueNameFilter

class rnaglib.transforms.ResidueNameFilter(value_checker=None, min_valid=1, **kwargs)

Filter RNAs based on their residuess’ names.

This filter keeps only the RNAs such that a minimal number of their residues’ names match a specific criterion.

Parameters:

• value_checker (Callable) – a method taking as input an RNA residue name and returning a boolean defining the filter’s criterion on the residues’ names (default None)

• min_valid (int) – the minimal number of residues within an RNA which have to match the above defined criterion so that the RNA is kept by the filter

__init__(value_checker=None, min_valid=1, **kwargs)

Methods

__init__([value_checker, min_valid])
forward(data)	Check if the RNA's name is in the list of allowed names.