rnaglib.dataset

Tools for loading and creating collections of RNAs.

dataset

RNA Objects

A single RNA is stored as a dictionary.

rna_from_pdbid(pdbid[, version, annotated, ...])

Fetch an annotated graph with a PDBID.

RNA Dataset

This is the main object used for holding collections of RNAs. The RNAdataset object draws from a database.

RNADataset([rnas, dataset_path, version, ...])

This class is the main object to hold RNA data, and is compatible with Pytorch Dataset.