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__init__() (rnaglib.algorithms.Hasher method)
(rnaglib.algorithms.SimFunctionNode method)
(rnaglib.data_loading.Collater method)
(rnaglib.data_loading.DefaultBasePairLoader method)
(rnaglib.data_loading.EdgeLoaderGenerator method)
(rnaglib.data_loading.RNADataset method)
(rnaglib.splitters.CDHitSplitter method)
(rnaglib.splitters.ClusterSplitter method)
(rnaglib.splitters.RandomSplitter method)
(rnaglib.splitters.RNAalignSplitter method)
(rnaglib.splitters.Splitter method)
(rnaglib.tasks.BindingSiteDetection method)
(rnaglib.tasks.ChemicalModification method)
(rnaglib.tasks.GMSM method)
(rnaglib.tasks.InverseFolding method)
(rnaglib.tasks.ResidueClassificationTask method)
(rnaglib.tasks.RNAClassificationTask method)
(rnaglib.tasks.RNAFamilyTask method)
(rnaglib.tasks.Task method)
(rnaglib.transforms.ChainNameTransform method)
(rnaglib.transforms.ChainSplitTransform method)
(rnaglib.transforms.FeaturesComputer method)
(rnaglib.transforms.FilterTransform method)
(rnaglib.transforms.GraphRepresentation method)
(rnaglib.transforms.PartitionTransform method)
(rnaglib.transforms.PDBIDNameTransform method)
(rnaglib.transforms.PointCloudRepresentation method)
(rnaglib.transforms.Representation method)
(rnaglib.transforms.ResidueAttributeFilter method)
(rnaglib.transforms.RfamTransform method)
(rnaglib.transforms.RibosomalFilter method)
(rnaglib.transforms.RNAAttributeFilter method)
(rnaglib.transforms.RNAFMTransform method)
(rnaglib.transforms.SizeFilter method)
(rnaglib.transforms.Transform method)
(rnaglib.transforms.VoxelRepresentation method)
B
bfs() (in module rnaglib.algorithms)
BindingSiteDetection (class in rnaglib.tasks)
build_iso() (in module rnaglib.config.build_iso_mat)
C
cdhit_wrapper() (in module rnaglib.utils)
CDHitSplitter (class in rnaglib.splitters)
ChainNameTransform (class in rnaglib.transforms)
ChainSplitTransform (class in rnaglib.transforms)
ChemicalModification (class in rnaglib.tasks)
cif_remove_residues() (in module rnaglib.utils)
circular_layout() (in module rnaglib.drawing.rna_layout)
ClusterSplitter (class in rnaglib.splitters)
Collater (class in rnaglib.data_loading)
D
DefaultBasePairLoader (class in rnaglib.data_loading)
download_graphs() (in module rnaglib.utils)
dump_json() (in module rnaglib.utils)
E
EdgeLoaderGenerator (class in rnaglib.data_loading)
extract_graphlet() (in module rnaglib.algorithms)
F
FeaturesComputer (class in rnaglib.transforms)
FilterTransform (class in rnaglib.transforms)
G
ged() (in module rnaglib.algorithms)
get_inference_loader() (in module rnaglib.data_loading)
get_loader() (in module rnaglib.data_loading)
get_undirected_iso() (in module rnaglib.config.build_iso_mat)
GMSM (class in rnaglib.tasks)
graph_from_pdbid() (in module rnaglib.utils)
GraphRepresentation (class in rnaglib.transforms)
H
Hasher (class in rnaglib.algorithms)
I
InverseFolding (class in rnaglib.tasks)
L
load_graph() (in module rnaglib.utils)
load_json() (in module rnaglib.utils)
locarna_wrapper() (in module rnaglib.utils)
M
make_label() (in module rnaglib.drawing.rna_draw)
module
rnaglib.algorithms
rnaglib.config.build_iso_mat
rnaglib.data_loading
rnaglib.drawing.rna_draw
rnaglib.drawing.rna_layout
rnaglib.splitters
rnaglib.tasks
rnaglib.transforms
rnaglib.utils
P
PartitionTransform (class in rnaglib.transforms)
PDBIDNameTransform (class in rnaglib.transforms)
PointCloudRepresentation (class in rnaglib.transforms)
process_axis() (in module rnaglib.drawing.rna_draw)
R
RandomSplitter (class in rnaglib.splitters)
Representation (class in rnaglib.transforms)
rescale_layout() (in module rnaglib.drawing.rna_layout)
ResidueAttributeFilter (class in rnaglib.transforms)
ResidueClassificationTask (class in rnaglib.tasks)
RfamTransform (class in rnaglib.transforms)
RibosomalFilter (class in rnaglib.transforms)
rna_align_wrapper() (in module rnaglib.utils)
rna_draw() (in module rnaglib.drawing.rna_draw)
rna_draw_grid() (in module rnaglib.drawing.rna_draw)
rna_draw_pair() (in module rnaglib.drawing.rna_draw)
RNAalignSplitter (class in rnaglib.splitters)
RNAAttributeFilter (class in rnaglib.transforms)
RNAClassificationTask (class in rnaglib.tasks)
RNADataset (class in rnaglib.data_loading)
RNAFamilyTask (class in rnaglib.tasks)
RNAFMTransform (class in rnaglib.transforms)
rnaglib.algorithms
module
rnaglib.config.build_iso_mat
module
rnaglib.data_loading
module
rnaglib.drawing.rna_draw
module
rnaglib.drawing.rna_layout
module
rnaglib.splitters
module
rnaglib.tasks
module
rnaglib.transforms
module
rnaglib.utils
module
S
SimFunctionNode (class in rnaglib.algorithms)
SizeFilter (class in rnaglib.transforms)
Splitter (class in rnaglib.splitters)
T
Task (class in rnaglib.tasks)
Transform (class in rnaglib.transforms)
V
VoxelRepresentation (class in rnaglib.transforms)
Table of Contents
Get Started
Homepage
Installation
Quickstart
Citing
Tutorials
What is an RNA 2.5D graph?
A tour of RNA 2.5D graphs
Using Tasks API
Building Custom Tasks
Customize Splitting
RNA Transforms
How is the data built?
Data Reference
Available Benchmark Tasks
RNA Annotation Reference
Package Reference
Algorithms
Databases
Datasets
Transforms
ML Tasks
Dataset Splitters
Visualization
Model Training
Utils
Configurations
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