Index

_

__init__() (rnaglib.algorithms.Hasher method) (rnaglib.algorithms.SimFunctionNode method) (rnaglib.data_loading.Collater method) (rnaglib.data_loading.DefaultBasePairLoader method) (rnaglib.data_loading.EdgeLoaderGenerator method) (rnaglib.data_loading.RNADataset method) (rnaglib.splitters.CDHitSplitter method) (rnaglib.splitters.ClusterSplitter method) (rnaglib.splitters.RandomSplitter method) (rnaglib.splitters.RNAalignSplitter method) (rnaglib.splitters.Splitter method) (rnaglib.tasks.BindingSiteDetection method) (rnaglib.tasks.ChemicalModification method) (rnaglib.tasks.InverseFolding method) (rnaglib.tasks.ResidueClassificationTask method) (rnaglib.tasks.RNAClassificationTask method) (rnaglib.tasks.Task method) (rnaglib.transforms.ChainNameTransform method) (rnaglib.transforms.ChainSplitTransform method) (rnaglib.transforms.FeaturesComputer method) (rnaglib.transforms.FilterTransform method) (rnaglib.transforms.GraphRepresentation method) (rnaglib.transforms.PartitionTransform method) (rnaglib.transforms.PDBIDNameTransform method) (rnaglib.transforms.PointCloudRepresentation method) (rnaglib.transforms.Representation method) (rnaglib.transforms.ResidueAttributeFilter method) (rnaglib.transforms.RfamTransform method) (rnaglib.transforms.RibosomalFilter method) (rnaglib.transforms.RNAAttributeFilter method) (rnaglib.transforms.RNAFMTransform method) (rnaglib.transforms.SizeFilter method) (rnaglib.transforms.Transform method) (rnaglib.transforms.VoxelRepresentation method)

B

bfs() (in module rnaglib.algorithms)

BindingSiteDetection (class in rnaglib.tasks) build_iso() (in module rnaglib.config.build_iso_mat)

C

cdhit_wrapper() (in module rnaglib.utils) CDHitSplitter (class in rnaglib.splitters) ChainNameTransform (class in rnaglib.transforms) ChainSplitTransform (class in rnaglib.transforms)

ChemicalModification (class in rnaglib.tasks) cif_remove_residues() (in module rnaglib.utils) circular_layout() (in module rnaglib.drawing.rna_layout) ClusterSplitter (class in rnaglib.splitters) Collater (class in rnaglib.data_loading)

D

DefaultBasePairLoader (class in rnaglib.data_loading)

download_graphs() (in module rnaglib.utils) dump_json() (in module rnaglib.utils)

E

EdgeLoaderGenerator (class in rnaglib.data_loading)

extract_graphlet() (in module rnaglib.algorithms)

F

FeaturesComputer (class in rnaglib.transforms)

FilterTransform (class in rnaglib.transforms)

G

ged() (in module rnaglib.algorithms) get_inference_loader() (in module rnaglib.data_loading) get_loader() (in module rnaglib.data_loading)

get_undirected_iso() (in module rnaglib.config.build_iso_mat) graph_from_pdbid() (in module rnaglib.utils) GraphRepresentation (class in rnaglib.transforms)

H

Hasher (class in rnaglib.algorithms)

I

InverseFolding (class in rnaglib.tasks)

L

load_graph() (in module rnaglib.utils)

load_json() (in module rnaglib.utils) locarna_wrapper() (in module rnaglib.utils)

M

make_label() (in module rnaglib.drawing.rna_draw) module rnaglib.algorithms rnaglib.config.build_iso_mat rnaglib.data_loading rnaglib.drawing.rna_draw rnaglib.drawing.rna_layout rnaglib.splitters rnaglib.tasks rnaglib.transforms rnaglib.utils

P

PartitionTransform (class in rnaglib.transforms) PDBIDNameTransform (class in rnaglib.transforms)

PointCloudRepresentation (class in rnaglib.transforms) process_axis() (in module rnaglib.drawing.rna_draw)

R

RandomSplitter (class in rnaglib.splitters) Representation (class in rnaglib.transforms) rescale_layout() (in module rnaglib.drawing.rna_layout) ResidueAttributeFilter (class in rnaglib.transforms) ResidueClassificationTask (class in rnaglib.tasks) RfamTransform (class in rnaglib.transforms) RibosomalFilter (class in rnaglib.transforms) rna_align_wrapper() (in module rnaglib.utils) rna_draw() (in module rnaglib.drawing.rna_draw) rna_draw_grid() (in module rnaglib.drawing.rna_draw) rna_draw_pair() (in module rnaglib.drawing.rna_draw) RNAalignSplitter (class in rnaglib.splitters) RNAAttributeFilter (class in rnaglib.transforms) RNAClassificationTask (class in rnaglib.tasks) RNADataset (class in rnaglib.data_loading) RNAFMTransform (class in rnaglib.transforms) rnaglib.algorithms module

rnaglib.config.build_iso_mat module rnaglib.data_loading module rnaglib.drawing.rna_draw module rnaglib.drawing.rna_layout module rnaglib.splitters module rnaglib.tasks module rnaglib.transforms module rnaglib.utils module

S

SimFunctionNode (class in rnaglib.algorithms)

SizeFilter (class in rnaglib.transforms) Splitter (class in rnaglib.splitters)

T

Task (class in rnaglib.tasks)

Transform (class in rnaglib.transforms)

V

VoxelRepresentation (class in rnaglib.transforms)